5XMX image
Deposition Date 2017-05-16
Release Date 2018-05-23
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XMX
Keywords:
TRANSCRIPTION/INHIBITOR
Title:
Co-crystal structure of Inhibitor compound in complex with human PPARdelta LBD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
5XMX validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peroxisome proliferator-activated receptor delta
Gene (Uniprot):PPARD
Chain IDs:A, B
Chain Length:275
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q03181 Pfam ID:PF00104
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
89L C LIG 3
Ligand Molecules
89L
Primary Citation
Novel highly selective peroxisome proliferator-activated receptor delta (PPAR delta) modulators with pharmacokinetic properties suitable for once-daily oral dosing.
Bioorg. Med. Chem. Lett. 27 5230 5234 (2017)
PMID: 29103972 DOI: 10.1016/j.bmcl.2017.10.037

Abstact

Optimization of benzamide PPARδ modulator 1 led to (E)-6-(2-((4-(furan-2-yl)-N-methylbenzamido)methyl)phenoxy)-4-methylhex-4-enoic acid (18), a potent selective PPARδ modulator with significantly improved exposure in multiple species following oral administration.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
5XMX