5XMV image
Deposition Date 2017-05-16
Release Date 2017-11-29
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XMV
Title:
Plasmodium vivax SHMT bound with PLP-glycine and GS362
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.30
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine hydroxymethyltransferase
Chain IDs:A, B, C
Chain Length:442
Number of Molecules:3
Biological Source:Plasmodium vivax
Primary Citation
Conformational Aspects in the Design of Inhibitors for Serine Hydroxymethyltransferase (SHMT): Biphenyl, Aryl Sulfonamide, and Aryl Sulfone Motifs
Chemistry 23 14345 14357 (2017)
PMID: 28967982 DOI: 10.1002/chem.201703244

Abstact

Malaria remains a major threat to mankind due to the perpetual emergence of resistance against marketed drugs. Twenty-one pyrazolopyran-based inhibitors bearing terminal biphenyl, aryl sulfonamide, or aryl sulfone motifs were synthesized and tested towards serine hydroxymethyltransferase (SHMT), a key enzyme of the folate cycle. The best ligands inhibited Plasmodium falciparum (Pf) and Arabidopsis thaliana (At) SHMT in target, as well as PfNF54 strains in cell-based assays in the low nanomolar range (18-56 nm). Seven co-crystal structures with P. vivax (Pv) SHMT were solved at 2.2-2.6 Å resolution. We observed an unprecedented influence of the torsion angle of ortho-substituted biphenyl moieties on cell-based efficacy. The peculiar lipophilic character of the sulfonyl moiety was highlighted in the complexes with aryl sulfonamide analogues, which bind in their preferred staggered orientation. The results are discussed within the context of conformational preferences in the ligands.

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Primary Citation of related structures