5XHW image
Entry Detail
PDB ID:
5XHW
Keywords:
Title:
Crystal structure of HddC from Yersinia pseudotuberculosis
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2017-04-24
Release Date:
2018-04-25
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative 6-deoxy-D-mannoheptose pathway protein
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Yersinia pseudotuberculosis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Crystal structure of d-glycero-alpha-d-manno-heptose-1-phosphate guanylyltransferase from Yersinia pseudotuberculosis.
Biochim. Biophys. Acta 1866 482 487 (2018)
PMID: 29277661 DOI: 10.1016/j.bbapap.2017.12.005

Abstact

The Gram-negative bacterium Yersinia pseudotuberculosis is the causative agent of yersiniosis. d-glycero-α-d-manno-heptose-1-phosphate guanylyltransferase (HddC) is the fourth enzyme of the GDP-d-glycero-α-d-manno-heptose biosynthesis pathway which is important for the virulence of the microorganism. Therefore, HddC is a potential target of antibiotics against yersiniosis. In this study, HddC from the synthesized HddC gene of Y. pseudotuberculosis has been expressed, purified, crystallized. Synchrotron X-ray data from a selenomethionine-substituted HddC crystal were also collected and its structure was determined at 2.0Å resolution. Structure analyses revealed that it belongs to the glycosyltransferase A type superfamily members with the signature motif GXGXR for nucleotide binding. Despite of remarkable structural similarity, HddC uses GTP for catalysis instead of CTP and UTP which are used for other major family members, cytidylyltransferase and uridylyltransferase, respectively. We suggest that EXXPLGTGGA and L(S/A/G)X(S/G) motifs are probably essential to bind with GTP and a FSFE motif with substrate.

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Primary Citation of related structures