5XH9 image
Deposition Date 2017-04-19
Release Date 2017-07-19
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XH9
Keywords:
Title:
Aspergillus kawachii beta-fructofuranosidase
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Extracellular invertase
Chain IDs:A
Chain Length:605
Number of Molecules:1
Biological Source:Aspergillus kawachii (strain NBRC 4308)
Ligand Molecules
Primary Citation
Crystal structure of a beta-fructofuranosidase with high transfructosylation activity from Aspergillus kawachii
Biosci. Biotechnol. Biochem. 81 1786 1795 (2017)
PMID: 28715279 DOI: 10.1080/09168451.2017.1353405

Abstact

β-Fructofuranosidases belonging to glycoside hydrolase family (GH) 32 are enzymes that hydrolyze sucrose. Some GH32 enzymes also catalyze transfructosylation to produce fructooligosaccharides. We found that Aspergillus kawachii IFO 4308 β-fructofuranosidase (AkFFase) produces fructooligosaccharides, mainly 1-kestose, from sucrose. We determined the crystal structure of AkFFase. AkFFase is composed of an N-terminal small component, a β-propeller catalytic domain, an α-helical linker, and a C-terminal β-sandwich, similar to other GH32 enzymes. AkFFase forms a dimer, and the dimerization pattern is different from those of other oligomeric GH32 enzymes. The complex structure of AkFFase with fructose unexpectedly showed that fructose binds both subsites -1 and +1, despite the fact that the catalytic residues were not mutated. Fructose at subsite +1 interacts with Ile146 and Glu296 of AkFFase via direct hydrogen bonds.

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Primary Citation of related structures