5XF1 image
Deposition Date 2017-04-06
Release Date 2017-05-24
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5XF1
Title:
Structure of the Full-length glucagon class B G protein-coupled receptor
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucagon receptor,Endolysin,Glucagon receptor
Gene (Uniprot):GCGR
Mutagens:C54T, C97A
Chain IDs:A, B
Chain Length:574
Number of Molecules:2
Biological Source:Homo sapiens, Enterobacteria phage T4
Polymer Type:polypeptide(L)
Molecule:Antibody mAb1 Heavy chain
Chain IDs:C, E (auth: H)
Chain Length:231
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Antibody mAb1 Light chain
Chain IDs:D, F (auth: L)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Peptide-like Molecules
PRD_900017
Primary Citation

Abstact

The human glucagon receptor, GCGR, belongs to the class B G-protein-coupled receptor family and plays a key role in glucose homeostasis and the pathophysiology of type 2 diabetes. Here we report the 3.0 Å crystal structure of full-length GCGR containing both the extracellular domain and transmembrane domain in an inactive conformation. The two domains are connected by a 12-residue segment termed the stalk, which adopts a β-strand conformation, instead of forming an α-helix as observed in the previously solved structure of the GCGR transmembrane domain. The first extracellular loop exhibits a β-hairpin conformation and interacts with the stalk to form a compact β-sheet structure. Hydrogen-deuterium exchange, disulfide crosslinking and molecular dynamics studies suggest that the stalk and the first extracellular loop have critical roles in modulating peptide ligand binding and receptor activation. These insights into the full-length GCGR structure deepen our understanding of the signalling mechanisms of class B G-protein-coupled receptors.

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Primary Citation of related structures