5XBS image
Entry Detail
PDB ID:
5XBS
Keywords:
Title:
Peroxiredoxin from Aeropyrum pernix (6m mutant)
Biological Source:
PDB Version:
Deposition Date:
2017-03-21
Release Date:
2018-01-31
Method Details:
Experimental Method:
Resolution:
2.51 Å
R-Value Free:
0.30
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Peroxiredoxin
Mutations:V23R, F80E, S81D, I83S, K84A, W210S
Chain IDs:A, B, C, D
Chain Length:250
Number of Molecules:4
Biological Source:Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Primary Citation
Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea
J. Biochem. 162 415 422 (2017)
PMID: 28992240 DOI: 10.1093/jb/mvx045

Abstact

Peroxiredoxin from Pyrococcus horikoshii (PhPrx) is a decameric protein formed by ring-type assembly of five dimers. To engineer the quaternary structure of PhPrx, we created a mutant PhPrx (PhPrx6m) by introducing six point mutations designed to dissociate PhPrx into dimers. Although PhPrx6m was a dimer in solution, the six dimers assembled into a dodecamer following crystallization. In the crystal structure, PhPrx6m was overoxidized, and the peroxidatic cysteine was in sulfonic acid form and two cysteines in the C-terminal region were linked by an intramolecular disulfide bond. Thus, we characterized the wild-type PhPrx overoxidized by hydrogen peroxide (PhPrxPer). Analytical ultracentrifugation showed that PhPrxPer had a higher molecular mass in solution than PhPrx. This was confirmed by analysis of the crystal structure of PhPrxPer, which was found to form a ring-type dodecamer composed of six dimers. The monomeric structures of PhPrx6m and PhPrxPer differed from that of PhPrx in the relative orientation of two domains, reflecting the number of dimers in the ring-type assembly. Unlike PhPrx, homologous peroxiredoxin from Aeropyrum pernix (ApPrx) did not undergo hexameric association. This property can be explained by the stronger connection between the two domains in ApPrx due to its C-terminal extension relative to PhPrx.

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