5XA1 image
Deposition Date 2017-03-10
Release Date 2017-04-19
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5XA1
Keywords:
Title:
Crystal structure of inositol 1,4,5-trisphosphate receptor cytosolic domain with inositol 1,4,5-trisphosphate
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.20 Å
R-Value Free:
0.38
R-Value Work:
0.35
R-Value Observed:
0.36
Space Group:
P 42
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Inositol 1,4,5-trisphosphate receptor type 1
Gene (Uniprot):Itpr1
Chain IDs:A, B
Chain Length:1581
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
IP3-mediated gating mechanism of the IP3 receptor revealed by mutagenesis and X-ray crystallography
Proc. Natl. Acad. Sci. U.S.A. 114 4661 4666 (2017)
PMID: 28416699 DOI: 10.1073/pnas.1701420114

Abstact

The inositol 1,4,5-trisphosphate (IP3) receptor (IP3R) is an IP3-gated ion channel that releases calcium ions (Ca2+) from the endoplasmic reticulum. The IP3-binding sites in the large cytosolic domain are distant from the Ca2+ conducting pore, and the allosteric mechanism of how IP3 opens the Ca2+ channel remains elusive. Here, we identify a long-range gating mechanism uncovered by channel mutagenesis and X-ray crystallography of the large cytosolic domain of mouse type 1 IP3R in the absence and presence of IP3 Analyses of two distinct space group crystals uncovered an IP3-dependent global translocation of the curvature α-helical domain interfacing with the cytosolic and channel domains. Mutagenesis of the IP3R channel revealed an essential role of a leaflet structure in the α-helical domain. These results suggest that the curvature α-helical domain relays IP3-controlled global conformational dynamics to the channel through the leaflet, conferring long-range allosteric coupling from IP3 binding to the Ca2+ channel.

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Primary Citation of related structures