5X9Q image
Deposition Date 2017-03-08
Release Date 2017-12-27
Last Version Date 2024-03-27
Entry Detail
PDB ID:
5X9Q
Keywords:
Title:
Crystal structure of HldC from Burkholderia pseudomallei
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative cytidylyltransferase
Gene (Uniprot):BPSL0395
Chain IDs:A, B, C, D
Chain Length:173
Number of Molecules:4
Biological Source:Burkholderia pseudomallei (strain K96243)
Ligand Molecules
Primary Citation
Crystal structure of D-glycero-Beta-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei.
Proteins 86 124 131 (2018)
PMID: 28986923 DOI: 10.1002/prot.25398

Abstact

The crystal structure of HldC from B. pseudomallei (BpHldC), the fourth enzyme of the heptose biosynthesis pathway, has been determined. BpHldC converts ATP and d-glycero-β-d-manno-heptose-1-phosphate into ADP-d-glycero-β-d-manno-heptose and pyrophosphate. The crystal structure of BpHldC belongs to the nucleotidyltransferase α/β phosphodiesterase superfamily sharing a common Rossmann-like α/β fold with a conserved T/HXGH sequence motif. The invariant catalytic key residues of BpHldC indicate that the core catalytic mechanism of BpHldC may be similar to that of other closest homologues. Intriguingly, a reorientation of the C-terminal helix seems to guide open and close states of the active site for the catalytic reaction.

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Primary Citation of related structures