5X9O image
Entry Detail
PDB ID:
5X9O
Title:
Crystal structure of the BCL6 BTB domain in complex with Compound 1a
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-03-08
Release Date:
2017-08-16
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:B-cell lymphoma 6 protein
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of a novel B-cell lymphoma 6 (BCL6)-corepressor interaction inhibitor by utilizing structure-based drug design
Bioorg. Med. Chem. 25 4876 4886 (2017)
PMID: 28760529 DOI: 10.1016/j.bmc.2017.07.037

Abstact

B-cell lymphoma 6 (BCL6) is a transcriptional repressor that can form complexes with corepressors via protein-protein interactions (PPIs). The complexes of BCL6 and corepressors play an important role in the formation of germinal centers (GCs), and differentiation and proliferation of lymphocytes. Therefore, BCL6-corepressor interaction inhibitors would be drug candidates for managing autoimmune diseases and cancer. Starting from high-throughput screening hits 1a and 2a, we identified a novel BCL6-corepressor interaction inhibitor 8c (cell-free enzyme-linked immunosorbent assay [ELISA] IC50=0.10µM, cell-based mammalian two-hybrid [M2H] assay IC50=0.72µM) by utilizing structure-based drug design (SBDD) based on an X-ray crystal structure of 1a bound to BCL6. Compound 8c also showed a good pharmacokinetic profile, which was acceptable for both in vitro and in vivo studies.

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Primary Citation of related structures