5X94 image
Deposition Date 2017-03-05
Release Date 2017-09-13
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5X94
Keywords:
Title:
Crystal structure of SHP2_SH2-CagA EPIYA_D peptide complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein phosphatase non-receptor type 11
Gene (Uniprot):PTPN11
Chain IDs:A, B
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cag pathogenicity island protein
Chain IDs:C (auth: L), D (auth: M), E (auth: N), F (auth: O)
Chain Length:13
Number of Molecules:4
Biological Source:Helicobacter pylori
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
PTR C TYR modified residue
Primary Citation
Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.
Cell Rep 20 2876 2890 (2017)
PMID: 28930683 DOI: 10.1016/j.celrep.2017.08.080

Abstact

Helicobacter pylori East Asian CagA is more closely associated with gastric cancer than Western CagA. Here we show that, upon tyrosine phosphorylation, the East Asian CagA-specific EPIYA-D segment binds to the N-SH2 domain of pro-oncogenic SHP2 phosphatase two orders of magnitude greater than Western CagA-specific EPIYA-C. This high-affinity binding is achieved via cryptic interaction between Phe at the +5 position from phosphotyrosine in EPIYA-D and a hollow on the N-SH2 phosphopeptide-binding floor. Also, duplication of EPIYA-C in Western CagA, which increases gastric cancer risk, enables divalent high-affinity binding with SHP2 via N-SH2 and C-SH2. These strong CagA bindings enforce enzymatic activation of SHP2, which endows cells with neoplastic traits. Mechanistically, N-SH2 in SHP2 is in an equilibrium between stimulatory "relaxed" and inhibitory "squeezed" states, which is fixed upon high-affinity CagA binding to the "relaxed" state that stimulates SHP2. Accordingly, East Asian CagA and Western CagA exploit distinct mechanisms for SHP2 deregulation.

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Primary Citation of related structures