5X8L image
Deposition Date 2017-03-03
Release Date 2017-08-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5X8L
Keywords:
Title:
PD-L1 in complex with atezolizumab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Programmed cell death 1 ligand 1
Gene (Uniprot):CD274
Mutations:Q47E
Chain IDs:A, D (auth: B), G (auth: C), J (auth: D), M (auth: E)
Chain Length:123
Number of Molecules:5
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:atezolizumab heavy chain
Chain IDs:C (auth: F), F (auth: G), I (auth: H), L (auth: S), O (auth: J)
Chain Length:230
Number of Molecules:5
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:atezolizumab light chain
Chain IDs:B (auth: K), E (auth: L), H (auth: M), K (auth: N), N (auth: O)
Chain Length:214
Number of Molecules:5
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular mechanism of PD-1/PD-L1 blockade via anti-PD-L1 antibodies atezolizumab and durvalumab
Sci Rep 7 5532 5532 (2017)
PMID: 28717238 DOI: 10.1038/s41598-017-06002-8

Abstact

In 2016 and 2017, monoclonal antibodies targeting PD-L1, including atezolizumab, durvalumab, and avelumab, were approved by the FDA for the treatment of multiple advanced cancers. And many other anti-PD-L1 antibodies are under clinical trials. Recently, the crystal structures of PD-L1 in complex with BMS-936559 and avelumab have been determined, revealing details of the antigen-antibody interactions. However, it is still unknown how atezolizumab and durvalumab specifically recognize PD-L1, although this is important for investigating novel binding sites on PD-L1 targeted by other therapeutic antibodies for the design and improvement of anti-PD-L1 agents. Here, we report the crystal structures of PD-L1 in complex with atezolizumab and durvalumab to elucidate the precise epitopes involved and the structural basis for PD-1/PD-L1 blockade by these antibodies. A comprehensive comparison of PD-L1 interactions with anti-PD-L1 antibodies provides a better understanding of the mechanism of PD-L1 blockade as well as new insights into the rational design of improved anti-PD-L1 therapeutics.

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Primary Citation of related structures