ISDA

Deposition Date 2017-02-24

Release Date 2017-09-13

Last Version Date 2023-11-22

Entry Detail

PDB ID:

5X79

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Human GST Pi conjugated with novel inhibitor, GS-ESF

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.90 Å

R-Value Free:

0.24

R-Value Work:

0.19

R-Value Observed:

0.20

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Glutathione S-transferase P
Gene (Uniprot):GSTP1
Chain IDs:A, B
Chain Length:210
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P09211 Pfam ID:PF02798, PF14497 EC:2.5.1.18

Ligand Molecules

GF5

MES

Primary Citation

A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP1-1).

Shishido, Y, Tomoike, F, Kimura, Y, Kuwata, K, Yano, T, Fukui, K, Fujikawa, H, Sekido, Y, Murakami-Tonami, Y, Kameda, T, Shuto, S, Abe, H.Show

Chem. Commun. (Camb.) 53 11138 11141 (2017)

PMID: 28848941 DOI: 10.1039/c7cc05829b

Abstact

We herein report the first covalent G-site-binding inhibitor for GST, GS-ESF (1), which irreversibly inhibited the GSTP1-1 function. LC-MS/MS and X-ray structure analyses of the covalently linked GST-inhibitor complex suggested that 1 reacted with Tyr108 of GSTP1-1. The mechanism of covalent bond formation was discussed based on MD simulation results.

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Primary Citation of related structures