5X72 image
Deposition Date 2017-02-23
Release Date 2017-10-04
Last Version Date 2023-11-22
Entry Detail
PDB ID:
5X72
Title:
The crystal Structure PDE delta in complex with (rac)-p9
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Gene (Uniprot):PDE6D
Chain IDs:A
Chain Length:150
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Biology-Inspired Discovery of Novel KRAS-PDE delta Inhibitors
J. Med. Chem. 60 9400 9406 (2017)
PMID: 28929751 DOI: 10.1021/acs.jmedchem.7b01243

Abstact

Structural biology is a powerful tool for investigating the stereospecific interactions between a protein and its ligand. Herein, an unprecedented chiral binding pattern was observed for inhibitors of KRAS-PDEδ interactions. Virtual screening and X-ray crystallography studies revealed that two enantiomers of a racemic inhibitor could bind at different sites. Fragment-based drug design was used to identify highly potent PDEδ inhibitors that can be used as promising lead compounds for target validation and antitumor drug development.

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Primary Citation of related structures