ISDA: 5X70

Deposition Date 2017-02-23

Release Date 2018-02-28

Last Version Date 2023-11-22

Entry Detail

PDB ID:

5X70

Keywords:

TRANSFERASE/RNA

Title:

Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer

Biological Source:

Source Organism:

Rice dwarf virus (isolate O) (Taxon ID: 142805)
Rice dwarf virus (Taxon ID: 10991)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.30 Å

R-Value Free:

0.26

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:mRNA capping enzyme P5
Chain IDs:A, B (auth: C), C (auth: D), D (auth: B)
Chain Length:804
Number of Molecules:4
Biological Source:Rice dwarf virus (isolate O)

UniProt ID:P14583

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3')
Chain IDs:E, F (auth: G)
Chain Length:6
Number of Molecules:2
Biological Source:Rice dwarf virus

Ligand Molecules

Primary Citation

Crystal structure of capping enzyme from Rice dwarf virus

Nakamichi, Y, Higashiura, A, Narita, H, Hagiwara, K, Uehara-Ichiki, T, Omura, T, Nakagawa, A.Show

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Primary Citation of related structures

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