5X58 image
Deposition Date 2017-02-15
Release Date 2017-05-03
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5X58
Keywords:
Title:
Prefusion structure of SARS-CoV spike glycoprotein, conformation 1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Chain IDs:A, B, C
Chain Length:1228
Number of Molecules:3
Biological Source:SARS coronavirus BJ01
Ligand Molecules
Primary Citation
Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains
Nat Commun 8 15092 15092 (2017)
PMID: 28393837 DOI: 10.1038/ncomms15092

Abstact

The envelope spike (S) proteins of MERS-CoV and SARS-CoV determine the virus host tropism and entry into host cells, and constitute a promising target for the development of prophylactics and therapeutics. Here, we present high-resolution structures of the trimeric MERS-CoV and SARS-CoV S proteins in its pre-fusion conformation by single particle cryo-electron microscopy. The overall structures resemble that from other coronaviruses including HKU1, MHV and NL63 reported recently, with the exception of the receptor binding domain (RBD). We captured two states of the RBD with receptor binding region either buried (lying state) or exposed (standing state), demonstrating an inherently flexible RBD readily recognized by the receptor. Further sequence conservation analysis of six human-infecting coronaviruses revealed that the fusion peptide, HR1 region and the central helix are potential targets for eliciting broadly neutralizing antibodies.

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Primary Citation of related structures