5X4F image
Deposition Date 2017-02-13
Release Date 2017-08-16
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5X4F
Title:
Solution Structure of the N-terminal Domain of TDP-43
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TAR DNA-binding protein 43
Gene (Uniprot):TARDBP
Mutagens:C39S/C50S
Chain IDs:A
Chain Length:77
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The N-terminal dimerization is required for TDP-43 splicing activity.
Sci Rep 7 6196 6196 (2017)
PMID: 28733604 DOI: 10.1038/s41598-017-06263-3

Abstact

TDP-43 is a nuclear factor that functions in promoting pre-mRNA splicing. Deletion of the N-terminal domain (NTD) and nuclear localization signal (NLS) (i.e., TDP-35) results in mislocalization to cytoplasm and formation of inclusions. However, how the NTD functions in TDP-43 activity and proteinopathy remains largely unknown. Here, we studied the structure and function of the NTD in inclusion formation and pre-mRNA splicing of TDP-43 by using biochemical and biophysical approaches. We found that TDP-43 NTD forms a homodimer in solution in a concentration-dependent manner, and formation of intermolecular disulfide results in further tetramerization. Based on the NMR structure of TDP-43 NTD, the dimerization interface centered on Leu71 and Val72 around the β7-strand was defined by mutagenesis and size-exclusion chromatography. Cell experiments revealed that the N-terminal dimerization plays roles in protecting TDP-43 against formation of cytoplasmic inclusions and enhancing pre-mRNA splicing activity of TDP-43 in nucleus. This study may provide mechanistic insights into the physiological function of TDP-43 and its related proteinopathies.

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Primary Citation of related structures