5X4A image
Deposition Date 2017-02-11
Release Date 2017-09-20
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5X4A
Title:
SLL-2-Forssman antigen tetrasaccharides complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.26
R-Value Work:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Galactose-binding lectin
Gene (Uniprot):sll-2b
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:94
Number of Molecules:12
Biological Source:Sinularia lochmodes
Ligand Molecules
Primary Citation
Crystal structure of octocoral lectin SLL-2 complexed with Forssman antigen tetrasaccharide.
Glycobiology ? ? ? (2017)
PMID: 28510705 DOI: 10.1093/glycob/cwx043

Abstact

A symbiosis-related lectin, SLL-2, from the octocoral Sinularia lochmodes, distributes densely on the cell surface of microalgae, Symbiodinium sp., an endosymbiotic dinoflagellate of the coral, and is also shown to be a chemical cue that transforms dinoflagellates into a nonmotile (coccoid) symbiotic state. SLL-2 binds to the sugar chain of the molecule similar to Forssman antigen pentasaccharide (GalNAcα1-3GalNAcβ1-3 Galα1-4 Galβ1-4Glc) on the surface of microalgae with high affinity. Here we report the crystal structure of the complex between SLL-2 and Forssman antigen tetrasaccharide (GalNAcα1-3GalNAcβ1-3 Galα1-4 Galβ) at 3.4 Å resolution. In an asymmetric unit of the crystal, there are two hexameric molecules with totally 12 sugar recognition sites. At 9 in 12 sites, the first and second saccharides of the Forssman antigen tetrasaccharide bind directly to galactopyranoside binding site of SLL-2, whereas the third and fourth saccharides have no interaction with the SLL-2 hexameric molecule that binds the first saccharide. The sugar chain bends at α-1,4-glycosidic linkage between the third and fourth saccharides toward the position that we defined as a pyranoside binding site in the crystal structure of the complex between SLL-2 and GalNAc. The structure allowed us to suggest a possible binding mode of the Forssman antigen pentasaccharide to SLL-2. These observations support our hypothesis that the binding of SLL-2 to the cell surface sugars of zooxanthella in a unique manner might trigger some physiological changes of the cell to adapt symbiosis with the host coral.

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Chemical

Disease

Primary Citation of related structures
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