5X0I image
Entry Detail
PDB ID:
5X0I
Keywords:
Title:
Crystal structure of PKM2 R399E mutant complexed with FBP and serine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-01-20
Release Date:
2018-01-31
Method Details:
Experimental Method:
Resolution:
2.64 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate kinase PKM
Mutations:R399E
Chain IDs:A, B, C, D
Chain Length:551
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Mutations in the PKM2 exon-10 region are associated with reduced allostery and increased nuclear translocation.
Commun Biol 2 105 105 (2019)
PMID: 30911680 DOI: 10.1038/s42003-019-0343-4

Abstact

PKM2 is a key metabolic enzyme central to glucose metabolism and energy expenditure. Multiple stimuli regulate PKM2's activity through allosteric modulation and post-translational modifications. Furthermore, PKM2 can partner with KDM8, an oncogenic demethylase and enter the nucleus to serve as a HIF1α co-activator. Yet, the mechanistic basis of the exon-10 region in allosteric regulation and nuclear translocation remains unclear. Here, we determined the crystal structures and kinetic coupling constants of exon-10 tumor-related mutants (H391Y and R399E), showing altered structural plasticity and reduced allostery. Immunoprecipitation analysis revealed increased interaction with KDM8 for H391Y, R399E, and G415R. We also found a higher degree of HIF1α-mediated transactivation activity, particularly in the presence of KDM8. Furthermore, overexpression of PKM2 mutants significantly elevated cell growth and migration. Together, PKM2 exon-10 mutations lead to structure-allostery alterations and increased nuclear functions mediated by KDM8 in breast cancer cells. Targeting the PKM2-KDM8 complex may provide a potential therapeutic intervention.

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Primary Citation of related structures