5WVX image
Deposition Date 2016-12-29
Release Date 2018-06-13
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5WVX
Title:
Crystal Structure of bifunctional Kunitz type Trypsin /amylase inhibitor (AMTIN) from the tubers of Alocasia macrorrhiza
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.31
R-Value Work:
0.27
R-Value Observed:
0.29
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Trypsin/chymotrypsin inhibitor
Chain IDs:A, B
Chain Length:184
Number of Molecules:2
Biological Source:Alocasia macrorrhizos
Primary Citation
Structural insights into a multifunctional inhibitor, 'AMTIN' from tubers of Alocasia macrorrhizos and its possible role in dengue protease (NS2B-NS3) inhibition.
Int. J. Biol. Macromol. 113 681 691 (2018)
PMID: 29505868 DOI: 10.1016/j.ijbiomac.2018.03.010

Abstact

Protease inhibitors from plants play major role in defensive mechanism against various pathogenic organisms. AMTIN from the tubers of Alocasia macrorrhiza has been purified and characterized as multi-functional Kunitz type protease inhibitor. AMTIN is varied from other KTIs by having three different loops specific for binding to trypsin/amylase and subtilisin that are located approximately 30Ǻ away from one another as evidenced from crystallographic efforts. Biochemical studies on AMTIN reveal simultaneous binding of protease/amylase and have been cross validated using in-silico tools to model Amylase - AMTIN - Trypsin complex without any steric clashes. Apart from multi functionality, the remarkable structural and functional stability of AMTIN at high temperature, presence of many phosphorylation, myristoylation and glycosylation sites and molecular docking studies with dengue viral protease (NS2B-NS3) makes this protein interesting. Hence AMTIN can be considered as a template to design effective antivirals against dengue virus.

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Primary Citation of related structures