5WRU image
Deposition Date 2016-12-03
Release Date 2017-10-11
Last Version Date 2025-09-17
Entry Detail
PDB ID:
5WRU
Keywords:
Title:
Crystal structure of type I inorganic pyrophosphatase from P falciparum
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable inorganic pyrophosphatase
Gene (Uniprot):MAL3P6.3, PFC0710w
Chain IDs:A, B, C, D, E
Chain Length:380
Number of Molecules:5
Biological Source:Plasmodium falciparum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Structural and Biochemical Characterization of Apicomplexan Inorganic Pyrophosphatases
Sci Rep 7 5255 5255 (2017)
PMID: 28701714 DOI: 10.1038/s41598-017-05234-y

Abstact

Inorganic pyrophosphatases (PPase) participate in energy cycling and they are essential for growth and survival of organisms. Here we report extensive structural and functional characterization of soluble PPases from the human parasites Plasmodium falciparum (PfPPase) and Toxoplasma gondii (TgPPase). Our results show that PfPPase is a cytosolic enzyme whose gene expression is upregulated during parasite asexual stages. Cambialistic PfPPase actively hydrolyzes linear short chain polyphosphates like PPi, polyP3 and ATP in the presence of Zn2+. A remarkable new feature of PfPPase is the low complexity asparagine-rich N-terminal region that mediates its dimerization. Deletion of N-region has an unexpected and substantial effect on the stability of PfPPase domain, resulting in aggregation and significant loss of enzyme activity. Significantly, the crystal structures of PfPPase and TgPPase reveal unusual and unprecedented dimeric organizations and provide new fundamental insights into the variety of oligomeric assemblies possible in eukaryotic inorganic PPases.

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Chemical

Disease

Primary Citation of related structures
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