5WPW image
Deposition Date 2016-11-21
Release Date 2017-10-25
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5WPW
Keywords:
Title:
Crystal structure of coconut allergen cocosin
Biological Source:
Source Organism:
Cocos nucifera (Taxon ID: 13894)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:11S globulin isoform 1
Mutagens:A398E, V416I
Chain IDs:A, B
Chain Length:424
Number of Molecules:2
Biological Source:Cocos nucifera
Primary Citation
Crystal Structure of Cocosin, A Potential Food Allergen from Coconut (Cocos nucifera)
J. Agric. Food Chem. 65 7560 7568 (2017)
PMID: 28712292 DOI: 10.1021/acs.jafc.7b02252

Abstact

Coconut (Cocos nucifera) is an important palm tree. Coconut fruit is widely consumed. The most abundant storage protein in coconut fruit is cocosin (a likely food allergen), which belongs to the 11S globulin family. Cocosin was crystallized near a century ago, but its structure remains unknown. By optimizing crystallization conditions and cryoprotectant solutions, we were able to obtain cocosin crystals that diffracted to 1.85 Å. The cocosin gene was cloned from genomic DNA isolated from dry coconut tissue. The protein sequence deduced from the predicted cocosin coding sequence was used to guide model building and structure refinement. The structure of cocosin was determined for the first time, and it revealed a typical 11S globulin feature of a double layer doughnut-shaped hexamer.

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