5WP9 image
Deposition Date 2017-08-03
Release Date 2018-06-20
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5WP9
Keywords:
Title:
Structural Basis of Mitochondrial Receptor Binding and Constriction by Dynamin-Related Protein 1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.22 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynamin-1-like protein
Gene (Uniprot):DNM1L
Chain IDs:A, C, E, G, I, K, M, O
Chain Length:710
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Mitochondrial dynamics protein MID49
Gene (Uniprot):MIEF2
Chain IDs:B, D, F, H, J, L, N, P
Chain Length:329
Number of Molecules:8
Biological Source:Homo sapiens
Primary Citation
Structural basis of mitochondrial receptor binding and constriction by DRP1.
Nature 558 401 405 (2018)
PMID: 29899447 DOI: 10.1038/s41586-018-0211-2

Abstact

Mitochondrial inheritance, genome maintenance and metabolic adaptation depend on organelle fission by dynamin-related protein 1 (DRP1) and its mitochondrial receptors. DRP1 receptors include the paralogues mitochondrial dynamics proteins of 49 and 51 kDa (MID49 and MID51) and mitochondrial fission factor (MFF); however, the mechanisms by which these proteins recruit and regulate DRP1 are unknown. Here we present a cryo-electron microscopy structure of full-length human DRP1 co-assembled with MID49 and an analysis of structure- and disease-based mutations. We report that GTP induces a marked elongation and rotation of the GTPase domain, bundle-signalling element and connecting hinge loops of DRP1. In this conformation, a network of multivalent interactions promotes the polymerization of a linear DRP1 filament with MID49 or MID51. After co-assembly, GTP hydrolysis and exchange lead to MID receptor dissociation, filament shortening and curling of DRP1 oligomers into constricted and closed rings. Together, these views of full-length, receptor- and nucleotide-bound conformations reveal how DRP1 performs mechanical work through nucleotide-driven allostery.

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Primary Citation of related structures