5WLI image
Deposition Date 2017-07-27
Release Date 2017-11-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5WLI
Keywords:
Title:
Crystal Structure of H-2Db with the GAP501 peptide (SQL)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Plasmodium berghei (Taxon ID: 5821)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, D-B alpha chain
Gene (Uniprot):H2-D1
Chain IDs:A, D, G, J
Chain Length:278
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B, E, H, K
Chain Length:99
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:GAP50 peptide
Gene (Uniprot):GAP50
Chain IDs:C, F, I, L
Chain Length:9
Number of Molecules:4
Biological Source:Plasmodium berghei
Ligand Molecules
Primary Citation
A T Cell Receptor Locus Harbors a Malaria-Specific Immune Response Gene.
Immunity 47 835 847.e4 (2017)
PMID: 29150238 DOI: 10.1016/j.immuni.2017.10.013

Abstact

Immune response (Ir) genes, originally proposed by Baruj Benacerraf to explain differential antigen-specific responses in animal models, have become synonymous with the major histocompatibility complex (MHC). We discovered a non-MHC-linked Ir gene in a T cell receptor (TCR) locus that was required for CD8+ T cell responses to the Plasmodium berghei GAP5040-48 epitope in mice expressing the MHC class I allele H-2Db. GAP5040-48-specific CD8+ T cell responses emerged from a very large pool of naive Vβ8.1+ precursors, which dictated susceptibility to cerebral malaria and conferred protection against recombinant Listeria monocytogenes infection. Structural analysis of a prototypical Vβ8.1+ TCR-H-2Db-GAP5040-48 ternary complex revealed that germline-encoded complementarity-determining region 1β residues present exclusively in the Vβ8.1 segment mediated essential interactions with the GAP5040-48 peptide. Collectively, these findings demonstrated that Vβ8.1 functioned as an Ir gene that was indispensable for immune reactivity against the malaria GAP5040-48 epitope.

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Primary Citation of related structures