5WKO image
Deposition Date 2017-07-25
Release Date 2017-10-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5WKO
Title:
Crystal structure of antibody 27F3 recognizing the HA from A/California/04/2009 (H1N1) influenza virus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.49 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody 27F3 heavy chain
Gene (Uniprot):DKFZp686P15220
Chain IDs:A, C, E, G, I, K
Chain Length:225
Number of Molecules:6
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody 27F3 light chain
Gene (Uniprot):IGK@
Chain IDs:B, D, F, H, J, L
Chain Length:213
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:M, N, O, S, T, U
Chain Length:331
Number of Molecules:6
Biological Source:Influenza A virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Chain IDs:P, Q, R, V, W, X
Chain Length:177
Number of Molecules:6
Biological Source:Influenza A virus
Ligand Molecules
Primary Citation
Antibody 27F3 Broadly Targets Influenza A Group 1 and 2 Hemagglutinins through a Further Variation in VH1-69 Antibody Orientation on the HA Stem.
Cell Rep 20 2935 2943 (2017)
PMID: 28930686 DOI: 10.1016/j.celrep.2017.08.084

Abstact

Antibodies that target both group 1 and group 2 influenza A viruses are valuable for therapeutic and vaccine development, but only a few have been reported to date. Here, we describe a new VH1-69 antibody 27F3 that broadly recognizes heterosubtypic hemagglutinins (HAs) from both group 1 and group 2 influenza A viruses. Structural characterization of 27F3 Fab with A/California/04/2009 (H1N1) hemagglutinin illustrates that 27F3 shares the key binding features observed in other VH1-69 antibodies to the HA stem. Compared to other VH1-69 antibodies, the 27F3 VH domain interacts with the HA stem in a distinct orientation, which alters its epitope and may have influenced its breadth. The diverse rotations of VH1-69 antibodies on the HA stem epitope highlight the different ways that this antibody family can evolve to broadly neutralize influenza A viruses. These results have important implications for understanding how to elicit broad antibody responses against influenza virus.

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Protein

Chemical

Disease

Primary Citation of related structures
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