5WKH image
Deposition Date 2017-07-25
Release Date 2017-09-20
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5WKH
Keywords:
Title:
D30 TCR in complex with HLA-A*11:01-GTS3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Dengue virus 3 (Taxon ID: 11069)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A-11 alpha chain
Chain IDs:A, F
Chain Length:274
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, G
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:GTS3 peptide
Chain IDs:C, H
Chain Length:10
Number of Molecules:2
Biological Source:Dengue virus 3
Polymer Type:polypeptide(L)
Molecule:T-cell receptor alpha variable 30,T-cell receptor, sp3.4 alpha chain
Gene (Uniprot):TRAV30
Chain IDs:D, I
Chain Length:198
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:D30 TCR beta chain
Chain IDs:E, J
Chain Length:244
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Germline bias dictates cross-serotype reactivity in a common dengue-virus-specific CD8(+) T cell response.
Nat. Immunol. 18 1228 1237 (2017)
PMID: 28945243 DOI: 10.1038/ni.3850

Abstact

Adaptive immune responses protect against infection with dengue virus (DENV), yet cross-reactivity with distinct serotypes can precipitate life-threatening clinical disease. We found that clonotypes expressing the T cell antigen receptor (TCR) β-chain variable region 11 (TRBV11-2) were 'preferentially' activated and mobilized within immunodominant human-leukocyte-antigen-(HLA)-A*11:01-restricted CD8+ T cell populations specific for variants of the nonstructural protein epitope NS3133 that characterize the serotypes DENV1, DENV3 and DENV4. In contrast, the NS3133-DENV2-specific repertoire was largely devoid of such TCRs. Structural analysis of a representative TRBV11-2+ TCR demonstrated that cross-serotype reactivity was governed by unique interplay between the variable antigenic determinant and germline-encoded residues in the second β-chain complementarity-determining region (CDR2β). Extensive mutagenesis studies of three distinct TRBV11-2+ TCRs further confirmed that antigen recognition was dependent on key contacts between the serotype-defined peptide and discrete residues in the CDR2β loop. Collectively, these data reveal an innate-like mode of epitope recognition with potential implications for the outcome of sequential exposure to heterologous DENVs.

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Primary Citation of related structures