5WI1 image
Entry Detail
PDB ID:
5WI1
Title:
Crystal structure of human NAMPT with fragment 5: (3E)-3-[(phenylamino)methylidene]oxan-2-one
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-07-18
Release Date:
2018-01-10
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nicotinamide phosphoribosyltransferase
Chain IDs:A, B
Chain Length:491
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Fragment-based discovery of a potent NAMPT inhibitor.
Bioorg. Med. Chem. Lett. 28 437 440 (2018)
PMID: 29287958 DOI: 10.1016/j.bmcl.2017.12.023

Abstact

NAMPT expression is elevated in many cancers, making this protein a potential target for anticancer therapy. We have carried out both NMR based and TR-FRET based fragment screens against human NAMPT and identified six novel binders with a range of potencies. Co-crystal structures were obtained for two of the fragments bound to NAMPT while for the other four fragments force-field driven docking was employed to generate a bound pose. Based on structural insights arising from comparison of the bound fragment poses to that of bound FK866 we were able to synthetically elaborate one of the fragments into a potent NAMPT inhibitor.

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Primary Citation of related structures