5WF5 image
Deposition Date 2017-07-11
Release Date 2018-02-21
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5WF5
Title:
Agonist bound human A2a adenosine receptor with D52N mutation at 2.60 A resolution
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Human A2a adenosine receptor T4L chimera
Gene (Uniprot):E, ADORA2A
Mutations:R1012G C1054T C1097A I1137R
Chain IDs:A
Chain Length:504
Number of Molecules:1
Biological Source:Homo sapiens, Enterobacteria phage T4
Primary Citation
Structural Connection between Activation Microswitch and Allosteric Sodium Site in GPCR Signaling.
Structure 26 259 269.e5 (2018)
PMID: 29395784 DOI: 10.1016/j.str.2017.12.013

Abstact

Sodium ions are endogenous allosteric modulators of many G-protein-coupled receptors (GPCRs). Mutation of key residues in the sodium binding motif causes a striking effect on G-protein signaling. We report the crystal structures of agonist complexes for two variants in the first sodium coordination shell of the human A2A adenosine receptor, D522.50N and S913.39A. Both structures present an overall active-like conformation; however, the variants show key changes in the activation motif NPxxY. Changes in the hydrogen bonding network in this microswitch suggest a possible mechanism for modified G-protein signaling and enhanced thermal stability. These structures, signaling data, and thermal stability analysis with a panel of pharmacological ligands provide a basis for understanding the role of the sodium-coordinating residues on stability and G-protein signaling. Utilizing the D2.50N variant is a promising method for stabilizing class A GPCRs to accelerate structural efforts and drug discovery.

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