5WET image
Deposition Date 2017-07-10
Release Date 2017-10-18
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5WET
Keywords:
Title:
Crystal Structure of H2-Dd with disulfide-linked 6mer peptide
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.64 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, D-D alpha chain
Gene (Uniprot):H2-D1
Mutagens:S73C
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Mutagens:R5C
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Surface protein gp120
Gene (Uniprot):env
Chain IDs:C (auth: P)
Chain Length:6
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B
Primary Citation
Crystal structure of a TAPBPR-MHC I complex reveals the mechanism of peptide editing in antigen presentation.
Science 358 1064 1068 (2017)
PMID: 29025991 DOI: 10.1126/science.aao5154

Abstact

Central to CD8+ T cell-mediated immunity is the recognition of peptide-major histocompatibility complex class I (p-MHC I) proteins displayed by antigen-presenting cells. Chaperone-mediated loading of high-affinity peptides onto MHC I is a key step in the MHC I antigen presentation pathway. However, the structure of MHC I with a chaperone that facilitates peptide loading has not been determined. We report the crystal structure of MHC I in complex with the peptide editor TAPBPR (TAP-binding protein-related), a tapasin homolog. TAPBPR remodels the peptide-binding groove of MHC I, resulting in the release of low-affinity peptide. Changes include groove relaxation, modifications of key binding pockets, and domain adjustments. This structure captures a peptide-receptive state of MHC I and provides insights into the mechanism of peptide editing by TAPBPR and, by analogy, tapasin.

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Primary Citation of related structures