5WEJ image
Deposition Date 2017-07-10
Release Date 2017-12-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5WEJ
Title:
1.95 A resolution structure of Norovirus 3CL protease in complex with a dipeptidyl oxazolidinone-based inhibitor
Biological Source:
Source Organism:
Norwalk virus (Taxon ID: 524364)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Gene (Uniprot):ORF1
Chain IDs:A, B
Chain Length:188
Number of Molecules:2
Biological Source:Norwalk virus
Ligand Molecules
Primary Citation
Structure-guided design, synthesis and evaluation of oxazolidinone-based inhibitors of norovirus 3CL protease.
Eur J Med Chem 143 881 890 (2017)
PMID: 29227928 DOI: 10.1016/j.ejmech.2017.12.014

Abstact

Acute nonbacterial gastroenteritis caused by noroviruses constitutes a global public health concern and a significant economic burden. There are currently no small molecule therapeutics or vaccines for the treatment of norovirus infections. A structure-guided approach was utilized in the design of a series of inhibitors of norovirus 3CL protease that embody an oxazolidinone ring as a novel design element for attaining optimal binding interactions. Low micromolar cell-permeable inhibitors that display anti-norovirus activity have been identified. The mechanism of action, mode of binding, and structural rearrangements associated with the interaction of the inhibitors and the enzyme were elucidated using X-ray crystallography.

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Primary Citation of related structures