5WDU image
Deposition Date 2017-07-06
Release Date 2018-04-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5WDU
Keywords:
Title:
HIV-1 Env BG505 SOSIP.664 H72C-H564C trimer in complex with bNAbs PGT122 Fab, 35O22 Fab and NIH45-46 scFv
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.00 Å
R-Value Free:
0.36
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Chain IDs:G (auth: A), L (auth: J), Q (auth: R)
Chain Length:147
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:bnAb PGT122 Fab light chain
Chain IDs:H (auth: B), M (auth: K), R (auth: S)
Chain Length:210
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:bnAb PGT122 Fab heavy chain
Chain IDs:I (auth: C), N (auth: L), S (auth: T)
Chain Length:232
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:bnAb NIH45-46 scFv
Chain IDs:B (auth: D), D (auth: O), F (auth: W)
Chain Length:250
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Chain IDs:A (auth: G), C (auth: F), E (auth: Q)
Chain Length:471
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:bnAb 35O22 Fab heavy chain
Chain IDs:J (auth: H), O (auth: M), T (auth: U)
Chain Length:242
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:bnAb 35O22 Fab light chain
Chain IDs:K (auth: I), P (auth: N), U (auth: V)
Chain Length:213
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

The production of native-like recombinant versions of the HIV-1 envelope glycoprotein (Env) trimer requires overcoming the natural flexibility and instability of the complex. The engineered BG505 SOSIP.664 trimer mimics the structure and antigenicity of native Env. Here, we describe how the introduction of new disulfide bonds between the glycoprotein (gp)120 and gp41 subunits of SOSIP trimers of the BG505 and other genotypes improves their stability and antigenicity, reduces their conformational flexibility, and helps maintain them in the unliganded conformation. The resulting next-generation SOSIP.v5 trimers induce strong autologous tier-2 neutralizing antibody (NAb) responses in rabbits. In addition, the BG505 SOSIP.v6 trimers induced weak heterologous NAb responses against a subset of tier-2 viruses that were not elicited by the prototype BG505 SOSIP.664. These stabilization methods can be applied to trimers from multiple genotypes as components of multivalent vaccines aimed at inducing broadly NAbs (bNAbs).

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Primary Citation of related structures