5WDF image
Entry Detail
PDB ID:
5WDF
Keywords:
Title:
Crystal structure of 10E8v4-5R+100cF Fab in complex with HIV-1 gp41 peptide
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2017-07-05
Release Date:
2018-03-21
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:10E8v4-5R+100cF Fab heavy chain
Chain IDs:A (auth: H), C (auth: A)
Chain Length:232
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:FA10E8v4-5R+100cF FAB light chain
Chain IDs:B (auth: L), D (auth: B)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HIV-1 gp41 peptide
Chain IDs:E (auth: P), F (auth: Q)
Chain Length:17
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Surface-Matrix Screening Identifies Semi-specific Interactions that Improve Potency of a Near Pan-reactive HIV-1-Neutralizing Antibody.
Cell Rep 22 1798 1809 (2018)
PMID: 29444432 DOI: 10.1016/j.celrep.2018.01.023

Abstact

Highly effective HIV-1-neutralizing antibodies could have utility in the prevention or treatment of HIV-1 infection. To improve the potency of 10E8, an antibody capable of near pan-HIV-1 neutralization, we engineered 10E8-surface mutants and screened for improved neutralization. Variants with the largest functional enhancements involved the addition of hydrophobic or positively charged residues, which were positioned to interact with viral membrane lipids or viral glycan-sialic acids, respectively. In both cases, the site of improvement was spatially separated from the region of antibody mediating molecular contact with the protein component of the antigen, thereby improving peripheral semi-specific interactions while maintaining unmodified dominant contacts responsible for broad recognition. The optimized 10E8 antibody, with mutations to phenylalanine and arginine, retained the extraordinary breadth of 10E8 but with ∼10-fold increased potency. We propose surface-matrix screening as a general method to improve antibodies, with improved semi-specific interactions between antibody and antigen enabling increased potency without compromising breadth.

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Primary Citation of related structures