5WB5 image
Deposition Date 2017-06-27
Release Date 2018-03-14
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5WB5
Keywords:
Title:
Leishmania IF4E-1 bound to Leishmania 4E-IP1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 62 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative eukaryotic translation initiation factor eIF-4E
Gene (Uniprot):EIF4E1
Chain IDs:A
Chain Length:219
Number of Molecules:1
Biological Source:Leishmania major
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein
Gene (Uniprot):LMJF_35_3980
Chain IDs:B
Chain Length:53
Number of Molecules:1
Biological Source:Leishmania major
Ligand Molecules
Primary Citation
Structural basis for LeishIF4E-1 modulation by an interacting protein in the human parasite Leishmania major.
Nucleic Acids Res. 46 3791 3801 (2018)
PMID: 29562352 DOI: 10.1093/nar/gky194

Abstact

Leishmania parasites are unicellular pathogens that are transmitted to humans through the bite of infected sandflies. Most of the regulation of their gene expression occurs post-transcriptionally, and the different patterns of gene expression required throughout the parasites' life cycle are regulated at the level of translation. Here, we report the X-ray crystal structure of the Leishmania cap-binding isoform 1, LeishIF4E-1, bound to a protein fragment of previously unknown function, Leish4E-IP1, that binds tightly to LeishIF4E-1. The molecular structure, coupled to NMR spectroscopy experiments and in vitro cap-binding assays, reveal that Leish4E-IP1 allosterically destabilizes the binding of LeishIF4E-1 to the 5' mRNA cap. We propose mechanisms through which Leish4E-IP1-mediated LeishIF4E-1 inhibition could regulate translation initiation in the human parasite.

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Primary Citation of related structures