5W8N image
Deposition Date 2017-06-22
Release Date 2018-01-31
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5W8N
Keywords:
Title:
Lipid A Disaccharide Synthase (LpxB)-6 solubilizing mutations
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lipid-A-disaccharide synthase
Mutagens:V66S, V68S, L69S, L72S, L75S, L76S
Chain IDs:A
Chain Length:382
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Primary Citation
Crystal structure of lipid A disaccharide synthase LpxB from Escherichia coli.
Nat Commun 9 377 377 (2018)
PMID: 29371662 DOI: 10.1038/s41467-017-02712-9

Abstact

Most Gram-negative bacteria are surrounded by a glycolipid called lipopolysaccharide (LPS), which forms a barrier to hydrophobic toxins and, in pathogenic bacteria, is a virulence factor. During LPS biosynthesis, a membrane-associated glycosyltransferase (LpxB) forms a tetra-acylated disaccharide that is further acylated to form the membrane anchor moiety of LPS. Here we solve the structure of a soluble and catalytically competent LpxB by X-ray crystallography. The structure reveals that LpxB has a glycosyltransferase-B family fold but with a highly intertwined, C-terminally swapped dimer comprising four domains. We identify key catalytic residues with a product, UDP, bound in the active site, as well as clusters of hydrophobic residues that likely mediate productive membrane association or capture of lipidic substrates. These studies provide the basis for rational design of antibiotics targeting a crucial step in LPS biosynthesis.

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Primary Citation of related structures