5W6R image
Deposition Date 2017-06-16
Release Date 2017-10-04
Last Version Date 2023-11-15
Entry Detail
PDB ID:
5W6R
Title:
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with cyclic peptide CP141099 (P6)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.73 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A, C, E, G
Chain Length:326
Number of Molecules:4
Biological Source:Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B, D, F, H
Chain Length:176
Number of Molecules:4
Biological Source:Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Polymer Type:polypeptide(L)
Molecule:ACE-PH8-ORN-LEU-GLU-TYR-PHE-GLU-TRP-LEU-SER-9WV
Chain IDs:I (auth: M), J (auth: O), K (auth: N), L (auth: Q)
Chain Length:12
Number of Molecules:4
Biological Source:synthetic construct
Ligand Molecules
Primary Citation

Abstact

Influenza therapeutics with new targets and mechanisms of action are urgently needed to combat potential pandemics, emerging viruses, and constantly mutating strains in circulation. We report here on the design and structural characterization of potent peptidic inhibitors of influenza hemagglutinin. The peptide design was based on complementarity-determining region loops of human broadly neutralizing antibodies against the hemagglutinin (FI6v3 and CR9114). The optimized peptides exhibit nanomolar affinity and neutralization against influenza A group 1 viruses, including the 2009 H1N1 pandemic and avian H5N1 strains. The peptide inhibitors bind to the highly conserved stem epitope and block the low pH-induced conformational rearrangements associated with membrane fusion. These peptidic compounds and their advantageous biological properties should accelerate the development of new small molecule- and peptide-based therapeutics against influenza virus.

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Primary Citation of related structures