5W5F image
Deposition Date 2017-06-15
Release Date 2017-08-16
Last Version Date 2024-03-13
Entry Detail
PDB ID:
5W5F
Keywords:
Title:
Cryo-EM structure of the T4 tail tube
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail tube protein gp19
Gene (Uniprot):19
Chain IDs:A, B (auth: R), C, D (auth: B), E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: I), K (auth: J), L (auth: K), M (auth: L), N (auth: M), O (auth: N), P (auth: O), Q (auth: P), R (auth: Q)
Chain Length:163
Number of Molecules:18
Biological Source:Enterobacteria phage T4 sensu lato
Ligand Molecules
Primary Citation
Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.
Structure 25 1436 1441.e2 (2017)
PMID: 28757144 DOI: 10.1016/j.str.2017.06.017

Abstact

The bacteriophage T4 contractile tail (containing a tube and sheath) was the first biological assembly reconstructed in three dimensions by electron microscopy at a resolution of ∼35 Å in 1968. A single-particle reconstruction of the T4 baseplate was able to generate a 4.1 Å resolution map for the first two rings of the tube using the overall baseplate for alignment. We have now reconstructed the T4 tail tube at a resolution of 3.4 Å, more than a 1,000-fold increase in information content for the tube from 1968. We have used legacy software (Spider) to show that we can do better than the typical 2/3 Nyquist frequency. A reasonable map can be generated with only 1.5 electrons/Å2 using the higher dose images for alignment, but increasing the dose results in a better map, consistent with other reports that electron dose does not represent the main limitation on resolution in cryo-electron microscopy.

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Primary Citation of related structures
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