5W5D image
Deposition Date 2017-06-14
Release Date 2017-08-23
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5W5D
Keywords:
Title:
Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vesicle-associated membrane protein 2
Gene (Uniprot):Vamp2
Chain IDs:A
Chain Length:40
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Syntaxin-1A
Gene (Uniprot):Stx1a
Chain IDs:B
Chain Length:67
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Synaptosomal-associated protein 25
Gene (Uniprot):Snap25
Chain IDs:C
Chain Length:77
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Synaptosomal-associated protein 25
Gene (Uniprot):Snap25
Chain IDs:D
Chain Length:65
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Complexin-1
Gene (Uniprot):Cplx1
Chain IDs:E
Chain Length:83
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Synaptotagmin-1
Gene (Uniprot):Syt1
Chain IDs:F
Chain Length:152
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
The primed SNARE-complexin-synaptotagmin complex for neuronal exocytosis.
Nature 548 420 425 (2017)
PMID: 28813412 DOI: 10.1038/nature23484

Abstact

Synaptotagmin, complexin, and neuronal SNARE (soluble N-ethylmaleimide sensitive factor attachment protein receptor) proteins mediate evoked synchronous neurotransmitter release, but the molecular mechanisms mediating the cooperation between these molecules remain unclear. Here we determine crystal structures of the primed pre-fusion SNARE-complexin-synaptotagmin-1 complex. These structures reveal an unexpected tripartite interface between synaptotagmin-1 and both the SNARE complex and complexin. Simultaneously, a second synaptotagmin-1 molecule interacts with the other side of the SNARE complex via the previously identified primary interface. Mutations that disrupt either interface in solution also severely impair evoked synchronous release in neurons, suggesting that both interfaces are essential for the primed pre-fusion state. Ca2+ binding to the synaptotagmin-1 molecules unlocks the complex, allows full zippering of the SNARE complex, and triggers membrane fusion. The tripartite SNARE-complexin-synaptotagmin-1 complex at a synaptic vesicle docking site has to be unlocked for triggered fusion to start, explaining the cooperation between complexin and synaptotagmin-1 in synchronizing evoked release on the sub-millisecond timescale.

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Primary Citation of related structures