5W4D image
Deposition Date 2017-06-10
Release Date 2018-06-13
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5W4D
Title:
C. japonica N-domain, Selenomethionine mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:P-granule scaffold protein
Mutations:I63M, I212M
Chain IDs:A, B, C, D
Chain Length:216
Number of Molecules:4
Biological Source:Caenorhabditis japonica
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
C. elegans germ granules require both assembly and localized regulators for mRNA repression.
Nat Commun 12 996 996 (2021)
PMID: 33579952 DOI: 10.1038/s41467-021-21278-1

Abstact

Cytoplasmic RNA-protein (RNP) granules have diverse biophysical properties, from liquid to solid, and play enigmatic roles in RNA metabolism. Nematode P granules are paradigmatic liquid droplet granules and central to germ cell development. Here we analyze a key P granule scaffolding protein, PGL-1, to investigate the functional relationship between P granule assembly and function. Using a protein-RNA tethering assay, we find that reporter mRNA expression is repressed when recruited to PGL-1. We determine the crystal structure of the PGL-1 N-terminal region to 1.5 Å, discover its dimerization, and identify key residues at the dimer interface. Mutations of those interface residues prevent P granule assembly in vivo, de-repress PGL-1 tethered mRNA, and reduce fertility. Therefore, PGL-1 dimerization lies at the heart of both P granule assembly and function. Finally, we identify the P granule-associated Argonaute WAGO-1 as crucial for repression of PGL-1 tethered mRNA. We conclude that P granule function requires both assembly and localized regulators.

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Primary Citation of related structures