5W3L image
Deposition Date 2017-06-08
Release Date 2017-07-12
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5W3L
Title:
CryoEM structure of rhinovirus B14 in complex with C5 Fab (4 degrees Celsius, molar ratio 1:3, full particle)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.71 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:viral protein 1
Chain IDs:A
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Molecule:viral protein 3
Chain IDs:B
Chain Length:236
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Molecule:viral protein 2
Chain IDs:C
Chain Length:262
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Molecule:viral protein 4
Chain IDs:D
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus 14
Polymer Type:polypeptide(L)
Molecule:C5 antibody variable heavy domain
Chain IDs:E
Chain Length:116
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:C5 antibody variable light domain
Chain IDs:F (auth: G)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Antibody-induced uncoating of human rhinovirus B14.
Proc. Natl. Acad. Sci. U.S.A. 114 8017 8022 (2017)
PMID: 28696310 DOI: 10.1073/pnas.1707369114

Abstact

Rhinoviruses (RVs) are the major causes of common colds in humans. They have a nonenveloped, icosahedral capsid surrounding a positive-strand RNA genome. Here we report that the antigen-binding (Fab) fragment of a neutralizing antibody (C5) can trigger genome release from RV-B14 to form emptied particles and neutralize virus infection. Using cryo-electron microscopy, structures of the C5 Fab in complex with the full and emptied particles have been determined at 2.3 Å and 3.0 Å resolution, respectively. Each of the 60 Fab molecules binds primarily to a region on viral protein 3 (VP3). Binding of the C5 Fabs to RV-B14 results in significant conformational changes around holes in the capsid through which the viral RNA might exit. These results are so far the highest resolution view of an antibody-virus complex and elucidate a mechanism whereby antibodies neutralize RVs and related viruses by inducing virus uncoating.

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Primary Citation of related structures