5W1M image
Deposition Date 2017-06-03
Release Date 2018-05-30
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5W1M
Title:
MACV GP1 CR1-07 Fab complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Machupo virus (Taxon ID: 11628)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.91 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CR1-07 Fab light chain
Chain IDs:A, C, E, G
Chain Length:221
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CR1-07 Fab heavy chain
Gene (Uniprot):DKFZp686P15220
Chain IDs:B, D, F, H
Chain Length:226
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Pre-glycoprotein polyprotein GP complex
Gene (Uniprot):GPC
Chain IDs:I (auth: Q), J (auth: R), K (auth: S), L (auth: T)
Chain Length:152
Number of Molecules:4
Biological Source:Machupo virus
Primary Citation
Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses.
Nat Commun 9 1884 1884 (2018)
PMID: 29760382 DOI: 10.1038/s41467-018-04271-z

Abstact

While five arenaviruses cause human hemorrhagic fevers in the Western Hemisphere, only Junin virus (JUNV) has a vaccine. The GP1 subunit of their envelope glycoprotein binds transferrin receptor 1 (TfR1) using a surface that substantially varies in sequence among the viruses. As such, receptor-mimicking antibodies described to date are type-specific and lack the usual breadth associated with this mode of neutralization. Here we isolate, from the blood of a recipient of the live attenuated JUNV vaccine, two antibodies that cross-neutralize Machupo virus with varying efficiency. Structures of GP1-Fab complexes explain the basis for efficient cross-neutralization, which involves avoiding receptor mimicry and targeting a conserved epitope within the receptor-binding site (RBS). The viral RBS, despite its extensive sequence diversity, is therefore a target for cross-reactive antibodies with activity against New World arenaviruses of public health concern.

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Primary Citation of related structures