5W1K image
Entry Detail
PDB ID:
5W1K
Title:
JUNV GP1 CR1-10 Fab CR1-28 Fab complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2017-06-03
Release Date:
2018-05-30
Method Details:
Experimental Method:
Resolution:
3.99 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CR1-28 Fab light chain
Chain IDs:A, F, K, S
Chain Length:206
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CR1-28 Fab heavy chain
Chain IDs:B, G, L, T
Chain Length:226
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CR1-10 Fab light chain
Chain IDs:C, H, M, N
Chain Length:213
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:CR1-10 Fab heavy chain
Chain IDs:D, I, O, Q
Chain Length:225
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Pre-glycoprotein polyprotein GP complex
Chain IDs:E, J, P, R
Chain Length:142
Number of Molecules:4
Biological Source:Junin mammarenavirus
Ligand Molecules
Primary Citation
Vaccine-elicited receptor-binding site antibodies neutralize two New World hemorrhagic fever arenaviruses.
Nat Commun 9 1884 1884 (2018)
PMID: 29760382 DOI: 10.1038/s41467-018-04271-z

Abstact

While five arenaviruses cause human hemorrhagic fevers in the Western Hemisphere, only Junin virus (JUNV) has a vaccine. The GP1 subunit of their envelope glycoprotein binds transferrin receptor 1 (TfR1) using a surface that substantially varies in sequence among the viruses. As such, receptor-mimicking antibodies described to date are type-specific and lack the usual breadth associated with this mode of neutralization. Here we isolate, from the blood of a recipient of the live attenuated JUNV vaccine, two antibodies that cross-neutralize Machupo virus with varying efficiency. Structures of GP1-Fab complexes explain the basis for efficient cross-neutralization, which involves avoiding receptor mimicry and targeting a conserved epitope within the receptor-binding site (RBS). The viral RBS, despite its extensive sequence diversity, is therefore a target for cross-reactive antibodies with activity against New World arenaviruses of public health concern.

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Primary Citation of related structures