5W0M image
Deposition Date 2017-05-31
Release Date 2017-06-28
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5W0M
Keywords:
Title:
Structure of human TUT7 catalytic module (CM) in complex with U5 RNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Terminal uridylyltransferase 7
Gene (Uniprot):TUT7
Mutations:D1160A
Chain IDs:A, B, C
Chain Length:389
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:U5 single-stranded RNA
Chain IDs:D (auth: H), E (auth: I), F (auth: J)
Chain Length:5
Number of Molecules:3
Biological Source:synthetic construct
Primary Citation
Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis.
Nat. Struct. Mol. Biol. 24 658 665 (2017)
PMID: 28671666 DOI: 10.1038/nsmb.3428

Abstact

The uridyl transferases TUT4 and TUT7 (collectively called TUT4(7)) switch between two modes of activity, either promoting expression of let-7 microRNA (monoU) or marking it for degradation (oligoU). Lin28 modulates the switch via recruitment of TUT4(7) to the precursor pre-let-7 in stem cells and human cancers. We found that TUT4(7) utilize two multidomain functional modules during the switch from monoU to oligoU. The catalytic module (CM) is essential for both activities, while the Lin28-interacting module (LIM) is indispensable for oligoU. A TUT7 CM structure trapped in the monoU activity staterevealed a duplex-RNA-binding pocket that orients group II pre-let-7 hairpins to favor monoU addition. Conversely, the switch to oligoU requires the ZK domain of Lin28 to drive the formation of a stable ternary complex between pre-let-7 and the inactive LIM. Finally, ZK2 of TUT4(7) aids oligoU addition by engaging the growing oligoU tail through uracil-specific interactions.

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