5W08 image
Deposition Date 2017-05-30
Release Date 2018-02-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5W08
Title:
A/Texas/50/2012(H3N2) Influenza hemagglutinin in complex with K03.12 Fab
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1
Gene (Uniprot):HA
Chain IDs:A, B, C, D, E, F
Chain Length:291
Number of Molecules:6
Biological Source:Influenza A virus (A/Texas/50/2012(H3N2))
Polymer Type:polypeptide(L)
Molecule:K03.12 antibody heavy chain
Chain IDs:G, I, K, M, O, Q
Chain Length:244
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:K03.12 antibody light chain
Gene (Uniprot):IGL@
Chain IDs:H, J, L, N, P, R
Chain Length:214
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Memory B Cells that Cross-React with Group 1 and Group 2 Influenza A Viruses Are Abundant in Adult Human Repertoires.
Immunity 48 174 184.e9 (2018)
PMID: 29343437 DOI: 10.1016/j.immuni.2017.12.009

Abstact

Human B cell antigen-receptor (BCR) repertoires reflect repeated exposures to evolving influenza viruses; new exposures update the previously generated B cell memory (Bmem) population. Despite structural similarity of hemagglutinins (HAs) from the two groups of influenza A viruses, cross-reacting antibodies (Abs) are uncommon. We analyzed Bmem compartments in three unrelated, adult donors and found frequent cross-group BCRs, both HA-head directed and non-head directed. Members of a clonal lineage from one donor had a BCR structure similar to that of a previously described Ab, encoded by different gene segments. Comparison showed that both Abs contacted the HA receptor-binding site through long heavy-chain third complementarity determining regions. Affinities of the clonal-lineage BCRs for historical influenza-virus HAs from both group 1 and group 2 viruses suggested that serial responses to seasonal influenza exposures had elicited the lineage and driven affinity maturation. We propose that appropriate immunization regimens might elicit a comparably broad response.

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Primary Citation of related structures