5VZW image
Deposition Date 2017-05-29
Release Date 2017-08-09
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5VZW
Title:
TRIM23 RING domain in complex with UbcH5-Ub
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D2
Gene (Uniprot):UBE2D2
Mutagens:S22R,C85K
Chain IDs:A, E (auth: B)
Chain Length:147
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBB
Chain IDs:B (auth: C), F (auth: D)
Chain Length:79
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase TRIM23
Gene (Uniprot):TRIM23
Chain IDs:C (auth: F), D (auth: G)
Chain Length:123
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure and catalytic activation of the TRIM23 RING E3 ubiquitin ligase.
Proteins 85 1957 1961 (2017)
PMID: 28681414 DOI: 10.1002/prot.25348

Abstact

Tripartite motif (TRIM) proteins comprise a large family of RING-type ubiquitin E3 ligases that regulate important biological processes. An emerging general model is that TRIMs form elongated antiparallel coiled-coil dimers that prevent interaction of the two attendant RING domains. The RING domains themselves bind E2 conjugating enzymes as dimers, implying that an active TRIM ligase requires higher-order oligomerization of the basal coiled-coil dimers. Here, we report crystal structures of the TRIM23 RING domain in isolation and in complex with an E2-ubiquitin conjugate. Our results indicate that TRIM23 enzymatic activity requires RING dimerization, consistent with the general model of TRIM activation.

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Primary Citation of related structures
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