ISDA: 5VY3

Deposition Date 2017-05-24

Release Date 2017-06-14

Last Version Date 2024-03-13

Entry Detail

PDB ID:

5VY3

Keywords:

HYDROLASE

Title:

Thermoplasma acidophilum 20S Proteasome using 200keV with stage position

Biological Source:

Source Organism:

Thermoplasma acidophilum (Taxon ID: 2303)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Proteasome subunit alpha
Gene (Uniprot):psmA
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W, Y, AA (auth: 0)
Chain Length:224
Number of Molecules:14
Biological Source:Thermoplasma acidophilum

UniProt ID:P25156 Pfam ID:PF10584, PF00227 EC:3.4.25.1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Proteasome subunit beta
Gene (Uniprot):psmB
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X, Z, BA (auth: 1)
Chain Length:203
Number of Molecules:14
Biological Source:Thermoplasma acidophilum

UniProt ID:P28061 Pfam ID:PF00227 EC:3.4.25.1

Ligand Molecules

Primary Citation

Achieving better-than-3- angstrom resolution by single-particle cryo-EM at 200 keV.

Herzik, M.A, Wu, M, Lander, G.C.Show

Nat. Methods 14 1075 1078 (2017)

PMID: 28991891 DOI: 10.1038/nmeth.4461

Abstact

Nearly all single-particle cryo-EM structures resolved to better than 4-Å resolution have been determined using 300-keV transmission electron microscopes (TEMs). We demonstrate that it is possible to obtain reconstructions of macromolecular complexes of different sizes to better than 3-Å resolution using a 200-keV TEM. These structures are of sufficient quality to unambiguously assign amino acid rotameric conformations and identify ordered water molecules.

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Protein

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Disease

Primary Citation of related structures

Abstact

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