5VX8 image
Entry Detail
PDB ID:
5VX8
Keywords:
Title:
VP8* of P[6] Human Rotavirus RV3
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-05-23
Release Date:
2018-07-18
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Outer capsid protein VP4
Chain IDs:A, B
Chain Length:161
Number of Molecules:2
Biological Source:Human rotavirus A
Ligand Molecules
Primary Citation
Glycan recognition in globally dominant human rotaviruses.
Nat Commun 9 2631 2631 (2018)
PMID: 29980685 DOI: 10.1038/s41467-018-05098-4

Abstact

Rotaviruses (RVs) cause life-threatening diarrhea in infants and children worldwide. Recent biochemical and epidemiological studies underscore the importance of histo-blood group antigens (HBGA) as both cell attachment and susceptibility factors for the globally dominant P[4], P[6], and P[8] genotypes of human RVs. How these genotypes interact with HBGA is not known. Here, our crystal structures of P[4] and a neonate-specific P[6] VP8*s alone and in complex with H-type I HBGA reveal a unique glycan binding site that is conserved in the globally dominant genotypes and allows for the binding of ABH HBGAs, consistent with their prevalence. Remarkably, the VP8* of P[6] RVs isolated from neonates displays subtle structural changes in this binding site that may restrict its ability to bind branched glycans. This provides a structural basis for the age-restricted tropism of some P[6] RVs as developmentally regulated unbranched glycans are more abundant in the neonatal gut.

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Primary Citation of related structures