5VX4 image
Deposition Date 2017-05-23
Release Date 2018-07-18
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5VX4
Keywords:
Title:
VP8* of a G2P[4] Human Rotavirus
Biological Source:
Source Organism:
Rotavirus A (Taxon ID: 28875)
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP4
Gene (Uniprot):VP4
Chain IDs:A
Chain Length:162
Number of Molecules:1
Biological Source:Rotavirus A
Ligand Molecules
Primary Citation
Glycan recognition in globally dominant human rotaviruses.
Nat Commun 9 2631 2631 (2018)
PMID: 29980685 DOI: 10.1038/s41467-018-05098-4

Abstact

Rotaviruses (RVs) cause life-threatening diarrhea in infants and children worldwide. Recent biochemical and epidemiological studies underscore the importance of histo-blood group antigens (HBGA) as both cell attachment and susceptibility factors for the globally dominant P[4], P[6], and P[8] genotypes of human RVs. How these genotypes interact with HBGA is not known. Here, our crystal structures of P[4] and a neonate-specific P[6] VP8*s alone and in complex with H-type I HBGA reveal a unique glycan binding site that is conserved in the globally dominant genotypes and allows for the binding of ABH HBGAs, consistent with their prevalence. Remarkably, the VP8* of P[6] RVs isolated from neonates displays subtle structural changes in this binding site that may restrict its ability to bind branched glycans. This provides a structural basis for the age-restricted tropism of some P[6] RVs as developmentally regulated unbranched glycans are more abundant in the neonatal gut.

Legend

Protein

Chemical

Disease

Primary Citation of related structures