5VVX image
Deposition Date 2017-05-21
Release Date 2017-09-27
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5VVX
Keywords:
Title:
Structural Investigations of the Substrate Specificity of Human O-GlcNAcase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein O-GlcNAcase
Gene (Uniprot):OGA
Chain IDs:A, B (auth: C)
Chain Length:504
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lamin B1
Chain IDs:C (auth: B), D
Chain Length:13
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into the substrate binding adaptability and specificity of human O-GlcNAcase.
Nat Commun 8 666 666 (2017)
PMID: 28939839 DOI: 10.1038/s41467-017-00865-1

Abstact

The O-linked β-N-acetyl glucosamine (O-GlcNAc) modification dynamically regulates the functions of numerous proteins. A single human enzyme O-linked β-N-acetyl glucosaminase (O-GlcNAcase or OGA) hydrolyzes this modification. To date, it remains largely unknown how OGA recognizes various substrates. Here we report the structures of OGA in complex with each of four distinct glycopeptide substrates that contain a single O-GlcNAc modification on a serine or threonine residue. Intriguingly, these glycopeptides bind in a bidirectional yet conserved conformation within the substrate-binding cleft of OGA. This study provides fundamental insights into a general principle that confers the substrate binding adaptability and specificity to OGA in O-GlcNAc regulation.O-linked β-N-acetyl glucosamine (O-GlcNAc) is an important protein modification that is hydrolyzed by O-GlcNAcase (OGA). Here the authors give insights into OGA substrate recognition by presenting four human OGA structures complexed with glycopeptide substrates containing a single O-GlcNAc modification on either a serine or threonine.

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Primary Citation of related structures