5VTM image
Deposition Date 2017-05-17
Release Date 2018-05-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5VTM
Title:
The crystal structure of minor pseudopilin ternary complex of XcpVWX from the Type 2 secretion system of Pseudomonas aeruginosa
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Type II secretion system protein I
Gene (Uniprot):xcpV
Chain IDs:C (auth: V)
Chain Length:92
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Polymer Type:polypeptide(L)
Molecule:Type II secretion system protein J
Gene (Uniprot):xcpW
Chain IDs:A (auth: W)
Chain Length:194
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Polymer Type:polypeptide(L)
Molecule:Type II secretion system protein K
Gene (Uniprot):xcpX
Chain IDs:B (auth: X)
Chain Length:273
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE B MET modified residue
Ligand Molecules
Primary Citation
Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa.
PLoS Pathog. 14 e1007343 e1007343 (2018)
PMID: 30346996 DOI: 10.1371/journal.ppat.1007343

Abstact

Pseudomonas aeruginosa utilizes the Type II secretion system (T2SS) to translocate a wide range of large, structured protein virulence factors through the periplasm to the extracellular environment for infection. In the T2SS, five pseudopilins assemble into the pseudopilus that acts as a piston to extrude exoproteins out of cells. Through structure determination of the pseudopilin complexes of XcpVWX and XcpVW and function analysis, we have confirmed that two minor pseudopilins, XcpV and XcpW, constitute a core complex indispensable to the pseudopilus tip. The absence of either XcpV or -W resulted in the non-functional T2SS. Our small-angle X-ray scattering experiment for the first time revealed the architecture of the entire pseudopilus tip and established the working model. Based on the interaction interface of complexes, we have developed inhibitory peptides. The structure-based peptides not only disrupted of the XcpVW core complex and the entire pseudopilus tip in vitro but also inhibited the T2SS in vivo. More importantly, these peptides effectively reduced the virulence of P. aeruginosa towards Caenorhabditis elegans.

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Primary Citation of related structures