5VTA image
Deposition Date 2017-05-16
Release Date 2018-05-09
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5VTA
Keywords:
Title:
Co-Crystal Structure of DPPIV with a Chemibody Inhibitor
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dipeptidyl peptidase 4
Gene (Uniprot):Dpp4
Chain IDs:A, B, C, D
Chain Length:739
Number of Molecules:4
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Fab heavy chain
Chain IDs:G (auth: H), H (auth: F), J (auth: I), L (auth: K)
Chain Length:217
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab light chain
Chain IDs:E (auth: L), F (auth: E), I (auth: G), K (auth: J)
Chain Length:213
Number of Molecules:4
Biological Source:Mus musculus
Primary Citation
Structure-guided Discovery of Dual-recognition Chemibodies.
Sci Rep 8 7570 7570 (2018)
PMID: 29765112 DOI: 10.1038/s41598-018-25848-0

Abstact

Small molecules and antibodies each have advantages and limitations as therapeutics. Here, we present for the first time to our knowledge, the structure-guided design of "chemibodies" as small molecule-antibody hybrids that offer dual recognition of a single target by both a small molecule and an antibody, using DPP-IV enzyme as a proof of concept study. Biochemical characterization demonstrates that the chemibodies present superior DPP-IV inhibition compared to either small molecule or antibody component alone. We validated our design by successfully solving a co-crystal structure of a chemibody in complex with DPP-IV, confirming specific binding of the small molecule portion at the interior catalytic site and the Fab portion at the protein surface. The discovery of chemibodies presents considerable potential for novel therapeutics that harness the power of both small molecule and antibody modalities to achieve superior specificity, potency, and pharmacokinetic properties.

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