5VT8 image
Deposition Date 2017-05-15
Release Date 2018-05-23
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5VT8
Keywords:
Title:
Crystal Structure of Mouse Cadherin-23 EC24-25
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.92 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cadherin-23
Gene (Uniprot):Cdh23
Chain IDs:A (auth: B), B (auth: A), C, D
Chain Length:221
Number of Molecules:4
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.
Structure 26 1210 ? (2018)
PMID: 30033219 DOI: 10.1016/j.str.2018.06.003

Abstact

Cadherin-23 (CDH23) is an essential component of hair-cell tip links, fine filaments that mediate inner-ear mechanotransduction. The extracellular domain of CDH23 forms about three-fourths of the tip link with 27 extracellular cadherin (EC) repeats that are structurally similar but not identical to each other. Calcium (Ca2+) coordination at the EC linker regions is key for tip-link elasticity and function. There are ∼116 sites in CDH23 affected by deafness-causing mutations, many of which alter conserved Ca2+-binding residues. Here we present crystal structures showing 18 CDH23 EC repeats, including the most and least conserved, a fragment carrying disease mutations, and EC repeats with non-canonical Ca2+-binding motif sequences and unusual secondary structure. Complementary experiments show deafness mutations' effects on stability and affinity for Ca2+. Additionally, a model of nine contiguous CDH23 EC repeats reveals helicity and potential parallel dimerization faces. Overall, our studies provide detailed structural insight into CDH23 function in mechanotransduction.

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Protein

Chemical

Disease

Primary Citation of related structures